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Accelerating molecular modeling applications with graphics processors

Authors:John E. Stone (1), James C. Phillips (1), Peter L. Freddolino (1, 2), David J. Hardy (1), Leonardo G. Trabuco (1, 2), Klaus Schulten (1, 2, 3) *

1. Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801
2. Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801
3. Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801
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CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment

Authors: Svetlin A. Manavski (1,2), Giorgio Valle (1)

1. CRIBI, University of Padova, Padova, Italy
2. Elaide, Srl, Padova, Italy
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